Ehrt, S., Schnappinger, D. (2006). Controlling gene expression in mycobacteria. Future Microbiology, 1, 177-184

Schnappinger, D., Schoolnik, GK., Ehrt, S. (2006). Expression profiling of host pathogen interactions: how M. tuberculosis and the macrophage adapt to one another. Microbes & Infection, 8,1132-40.

Shi, S., Ehrt, S. (2005). Dihydrolipoamide acyltransferase (DlaT) is critical for Mycobacterium tuberculosis pathogenesis. Infect. Immun. 74, 56-63.

Shi, S., Blumenthal, A., Hickey, C.M., , Gandotra, S., Levy, D. and Ehrt, S. (2005). Viable Mycobacterium tuberculosis induces expression of immunologically important genes in macrophages through a pathway independent of both TLR2 and TLR4 but dependent on IFNab-receptor and STAT1. J. Immunol.175, 3318-3328.

Ding, Yu, H., Yang, J., Shuangping, S. and Ehrt, S. (2005). Induction of macrophage-derived SLPI by Mycobacterium tuberculosis depends on TLR2 but not MyD88. Immunology. 116, 381-389.

Morris, RP., Nguyen, L., Gatfield, J., Visconti, K., Nguyen, K., Schnappinger, D., Ehrt, S., Liu, Y., Heifets, L., Pieters, J., Schoolnik, G., Thompson, C. (2005). Ancestral antibiotic resistance in Mycobacterium tuberculosis. PNAS. 102, 12200-5.

Ehrt, S., Guo, X.V., Hickey, C.M., Ryou, M., Monteleone, M., Riley, L.W., and Schnappinger, D. (2005). Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor. Nucleic Acids Res. 33:e21.

Darwin, K.H., Ehrt, S. Gutierrez-Ramos, J., Weich, N. and Nathan, C. (2003). The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide. Science. 302,1963-1966.

Shi, S., Nathan, C., Schnappinger, D., Drenkow, J., Fuortes, M., Block, E., Ding, A., Gingeras, T.R., Schoolnik, G., Akira, S., Takeda, K., and Ehrt, S (2003). MyD88 primes macrophages for full-scale activation by interferon-g yet mediates few responses to Mycobacterium tuberculosis. J. Exp. Med. 198, 987-997.

Schnappinger, D., Ehrt, S., Voskuil, M.I., Liu, Y., Mangan, J.A., Monahan, I.M., Dolganov, G., Efron, B., Butcher, P.D., Nathan, C., and Schoolnik, G.K. (2003). Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment. J. Exp. Med. 198, 693-704.

Ehrt, S., Schnappinger, D., Bekiranov, S., Drenkow, J., Shi, S., Gingeras, T. R., Gaasterland, T., Schoolnik, G. and Nathan, C. (2001). Reprogramming of the macrophage transcriptome in response to interferon-g and Mycobacterium tuberculosis: Signaling roles of nitric oxide synthase-2 and phagocyte oxidase. J. Exp. Med. 194, 1123-1139